net.sf.samtools.example
Class ExampleSamUsage

java.lang.Object
  net.sf.samtools.example.ExampleSamUsage

public class ExampleSamUsage
extends Object

Constructor Summary

ExampleSamUsage()

Method Summary

void	convertReadNamesToUpperCase(File inputSamOrBamFile, File outputSamOrBamFile) Read a SAM or BAM file, convert each read name to upper case, and write a new SAM or BAM file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExampleSamUsage

public ExampleSamUsage()

Method Detail

convertReadNamesToUpperCase

public void convertReadNamesToUpperCase(File inputSamOrBamFile,
                                        File outputSamOrBamFile)

Read a SAM or BAM file, convert each read name to upper case, and write a new SAM or BAM file.