net.sf.samtools.example
Class ExampleSamUsage

java.lang.Object
  extended by net.sf.samtools.example.ExampleSamUsage

public class ExampleSamUsage
extends Object


Constructor Summary
ExampleSamUsage()
           
 
Method Summary
 void convertReadNamesToUpperCase(File inputSamOrBamFile, File outputSamOrBamFile)
          Read a SAM or BAM file, convert each read name to upper case, and write a new SAM or BAM file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ExampleSamUsage

public ExampleSamUsage()
Method Detail

convertReadNamesToUpperCase

public void convertReadNamesToUpperCase(File inputSamOrBamFile,
                                        File outputSamOrBamFile)
Read a SAM or BAM file, convert each read name to upper case, and write a new SAM or BAM file.