net.sf.picard.util
Interface AdapterPair

All Known Implementing Classes:
IlluminaUtil.IlluminaAdapterPair

public interface AdapterPair


Method Summary
 String get3PrimeAdapter()
           
 byte[] get3PrimeAdapterBytes()
           
 byte[] get3PrimeAdapterBytesInReadOrder()
           
 String get3PrimeAdapterInReadOrder()
           
 String get5PrimeAdapter()
           
 byte[] get5PrimeAdapterBytes()
           
 byte[] get5PrimeAdapterBytesInReadOrder()
           
 String get5PrimeAdapterInReadOrder()
           
 String getName()
           
 

Method Detail

get3PrimeAdapter

String get3PrimeAdapter()

get3PrimeAdapterInReadOrder

String get3PrimeAdapterInReadOrder()

get3PrimeAdapterBytes

byte[] get3PrimeAdapterBytes()

get3PrimeAdapterBytesInReadOrder

byte[] get3PrimeAdapterBytesInReadOrder()

get5PrimeAdapter

String get5PrimeAdapter()

get5PrimeAdapterInReadOrder

String get5PrimeAdapterInReadOrder()

get5PrimeAdapterBytes

byte[] get5PrimeAdapterBytes()

get5PrimeAdapterBytesInReadOrder

byte[] get5PrimeAdapterBytesInReadOrder()

getName

String getName()