net.sf.picard.sam
Interface AbstractDuplicateFindingAlgorithm.PhysicalLocation

Enclosing class:

AbstractDuplicateFindingAlgorithm

public static interface AbstractDuplicateFindingAlgorithm.PhysicalLocation

Small interface that provides access to the physical location information about a cluster. All values should be defaulted to -1 if unavailable. ReadGroup and Tile should only allow non-zero positive integers, x and y coordinates may be negative.

Method Summary

short	getReadGroup()
byte	getTile()
short	getX()
short	getY()
void	setReadGroup(short rg)
void	setTile(byte tile)
void	setX(short x)
void	setY(short y)

Method Detail

getReadGroup

short getReadGroup()

setReadGroup

void setReadGroup(short rg)

getTile

byte getTile()

setTile

void setTile(byte tile)

getX

short getX()

setX

void setX(short x)

getY

short getY()

setY

void setY(short y)