net.sf.picard.sam
Interface AbstractDuplicateFindingAlgorithm.PhysicalLocation

Enclosing class:
AbstractDuplicateFindingAlgorithm

public static interface AbstractDuplicateFindingAlgorithm.PhysicalLocation

Small interface that provides access to the physical location information about a cluster. All values should be defaulted to -1 if unavailable. ReadGroup and Tile should only allow non-zero positive integers, x and y coordinates may be negative.


Method Summary
 short getReadGroup()
           
 short getTile()
           
 short getX()
           
 short getY()
           
 void setReadGroup(short rg)
           
 void setTile(short tile)
           
 void setX(short x)
           
 void setY(short y)
           
 

Method Detail

getReadGroup

short getReadGroup()

setReadGroup

void setReadGroup(short rg)

getTile

short getTile()

setTile

void setTile(short tile)

getX

short getX()

setX

void setX(short x)

getY

short getY()

setY

void setY(short y)